Basic Information
VIS ID
TVIS30012059
Fusion event
HIV-ZNF200 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3276295/3226295 (Hg38)
End
3276295/3226295 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF200
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-let-7d-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-8077 ; hsa-mir-7160-5p ; hsa-mir-4663 ; hsa-mir-202-3p ; hsa-mir-203a-3p ; hsa-mir-7162-3p ; hsa-mir-4780 ; hsa-mir-4307 ; hsa-mir-3651 ; hsa-mir-4728-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p ; hsa-mir-33a-3p ; hsa-let-7c-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7i-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p
Nearest miRNA
hsa-mir-1225/Upstream/694290; hsa-mir-11401/Downstream/259086;
Nearest TSS
ENST00000527434/Upstream/22048; ENST00000572123/Downstream/1510;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/32712, chr16-CpG: 76/Downstream/8344
Upstream sequence
acgtccaccaccgcgcccagctaattttttgtatttatagtagagagagggtttcatcgtgttagccaggatggtcttgatgatctcctgacctcgtgat
Downstream sequence
ccacccgcctaggcctcccaaagtgctgggattacaggcatgagccactgcgcccgaccTAATTATTCTTTTTAATCACTCCCTTAGGATAATGAAATGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate