Basic Information
VIS ID
TVIS30012070
Fusion event
HIV-HMOX2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4530681/4480680 (Hg38)
End
4530681/4480680 (Hg38)
Orient
-
Location type
Intronic
Target gene
HMOX2
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-1225/Upstream/995211; hsa-mir-11401/Downstream/190638;
Nearest TSS
ENST00000527434/Upstream/4221; ENST00000575129/Downstream/15083;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/3754, chr16-CpG: 119/Downstream/57155
Upstream sequence
gtggtccacccactttggcctcccaattagaattagaggtggagcgaccgtgcccggcTAAGGGCCTACTAttttttttttttttttttgagacagagtt
Downstream sequence
tcactcttgtcacccaggctggagtgcagtggtgtgaccttggttcactgcaacttccacctcccaggtttaagcgattctcctgcctcagcctctggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate