Basic Information
VIS ID
TVIS30012073
Fusion event
HIV-HMOX2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4551193/4501192 (Hg38)
End
4551193/4501192 (Hg38)
Orient
+
Location type
Intronic
Target gene
HMOX2
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-1225/Upstream/1015723; hsa-mir-11401/Downstream/170126;
Nearest TSS
ENST00000527434/Upstream/5046; ENST00000570622/Downstream/6867;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/24266, chr16-CpG: 119/Downstream/36643
Upstream sequence
GCTGGTTTGCTTGGTCCAATTCCTGTCTCTCGGTTTCTTTTttcccttcccttcgctgccttcccctccctcttcccttTTTCTTTCCAAGAGAATTGAG
Downstream sequence
TCACTCCATATAAAAGAAGCAGCCAGTTGGCTAAAAAGTCCAACAAAAAACAAGTATTTATAGCTCTCCAAATTTCCCACTTGTCATTATCAGTATACTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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