Basic Information
VIS ID
TVIS30012076
Fusion event
HIV-TXNDC11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
11824623/11730767 (Hg38)
End
11824623/11730767 (Hg38)
Orient
-
Location type
Exonic
Target gene
TXNDC11
miRNAs that regulate target gene
hsa-mir-26a-5p
Nearest miRNA
hsa-mir-1225/Upstream/424240; hsa-mir-11401/Downstream/989554;
Nearest TSS
ENST00000527434/Upstream/38525; ENST00000572811/Downstream/3232;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/61680, chr16-CpG: 114/Downstream/11450
Upstream sequence
GTAATTCTGATTGAGATGGGATGTAGAGAAGTGGTTTCATCACCCGGCGGACAAACTTCTCAATGTAAACAGCACTCATGGGGCCTTTGTATTCGATTGG
Downstream sequence
TCCAAAACTAGTACCAaaaaataaaaataaaaataaaaataataaaaataaTACACCATGCATTAAGCCTGTAATGTATAACTAAAATCATCACCACCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate