VISDB Viral Integration Site DataBase

VIS ID

TVIS30012084

Fusion event

HIV-DCUN1D3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.3

Reference genome

Start

End

20900123/20888801 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-6083 ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-1277-5p ; hsa-mir-2113 ; hsa-mir-7150 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4696 ; hsa-mir-5009-3p ; hsa-mir-5680 ; hsa-mir-5197-5p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-298 ; hsa-mir-4693-3p ; hsa-mir-4709-5p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-454-3p ; hsa-mir-301a-3p ; hsa-mir-3666 ; hsa-mir-148a-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-1233-3p ; hsa-mir-129-1-3p ; hsa-mir-129-2-3p ; hsa-mir-1303 ; hsa-mir-1910-3p ; hsa-mir-300 ; hsa-mir-3714 ; hsa-mir-381-3p ; hsa-mir-3919 ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-624-3p ; hsa-mir-6511a-5p

Nearest miRNA

hsa-mir-1225/Upstream/2394225; hsa-mir-11401/Downstream/617248;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/81609, chr16-CpG: 87/Downstream/11443

Nearest cancer related gene

DCUN1D3(TSG, No orient, 0)

Upstream sequence

tggctaggcctcttaaaatgctaggactacaggcatgagccaccatgcctggccCACTATGTATATCTAAATCTTTTAAAAAGTCATATTAAAAAGTAAC

Downstream sequence

ATGggccaggtgccgtggctcacacctgtaatccctgcactttgggaggccgaggcaggtggatcacttgaggtcaggagttcgagaccagcctggccaa