Basic Information
VIS ID
TVIS30012086
Fusion event
HIV-UQCRC2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
21977604/21966283 (Hg38)
End
21977604/21966283 (Hg38)
Orient
+
Location type
Intronic
Target gene
UQCRC2
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-23b-3p ; hsa-mir-196a-5p
Nearest miRNA
hsa-mir-1225/Upstream/460148; hsa-mir-11401/Downstream/2236833;
Nearest TSS
ENST00000527434/Upstream/4091; ENST00000567810/Downstream/2179;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/131277, chr16-CpG: 115/Downstream/41383
Upstream sequence
acatatatataAAATAGGTCCTTTGACTAAAACTCTTTGGTCTCTCTGAATTTGTAAATAAGACTTGAGCCCACTTCCTTAGCTCCTGTTCCATCCTCGC
Downstream sequence
TCACTCATTCACGTTCTTCAGCACACCAGCCTCCGTTTGCTGGCTATAGGGGTTTGTCACATGCCACAGCCATATGTGCATCTTAGAACTTTGTTTCCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate