VISDB Viral Integration Site DataBase

VIS ID

TVIS30012088

Fusion event

HIV-MOSMO integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.2

Reference genome

Start

End

22048330/22037009 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-153-3p ; hsa-mir-153-5p ; hsa-mir-106b-5p ; hsa-mir-330-3p ; hsa-mir-20b-5p ; hsa-mir-495-3p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-921 ; hsa-mir-4422 ; hsa-mir-5688 ; hsa-mir-6715a-3p ; hsa-mir-6868-3p ; hsa-mir-589-5p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3174 ; hsa-mir-605-5p ; hsa-mir-146a-5p ; hsa-mir-146b-5p ; hsa-mir-7153-5p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-129-5p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-4672 ; hsa-mir-6768-5p ; hsa-mir-4789-5p ; hsa-mir-526b-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-4719 ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-216b-5p ; hsa-mir-1468-3p ; hsa-mir-545-3p ; hsa-mir-656-3p ; hsa-mir-410-3p ; hsa-mir-548p ; hsa-mir-1277-5p ; hsa-mir-3606-3p ; hsa-mir-466 ; hsa-mir-513a-3p ; hsa-mir-513c-3p

Nearest miRNA

hsa-mir-1225/Upstream/530874; hsa-mir-11401/Downstream/2166107;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/28273, chr16-CpG: 28/Downstream/125348

Upstream sequence

GCCTAGTGGGCAGGTGAAACTCATAAGTCAGACTAGGATTGGAGATACAGAATGAAAAGTCATCAGCCTATGACTGATTTTGGAAGCTATTGTAGGAATA

Downstream sequence

TTTTCCAGGGAGAGTAAGAAGAGTAAGGAGAAACAAGAGAACCCAGGAAAGAACCCTGAAGGTCACCAGCATTTTAAGGATGCTGAGAAAAAGCTAGACT