VISDB Viral Integration Site DataBase

VIS ID

TVIS30012091

Fusion event

HIV-DCTN5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.2

Reference genome

Start

End

23675528/23664207 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-375 ; hsa-mir-122-5p ; hsa-mir-484 ; hsa-mir-193a-3p ; hsa-mir-149-5p ; hsa-let-7c-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-34a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-320a ; hsa-mir-34c-5p ; hsa-mir-424-5p ; hsa-mir-449a ; hsa-mir-497-5p ; hsa-mir-503-5p ; hsa-mir-612 ; hsa-mir-449b-5p ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-374b-3p ; hsa-mir-922 ; hsa-mir-1285-3p ; hsa-mir-1257 ; hsa-mir-320d ; hsa-mir-3152-3p ; hsa-mir-3187-5p ; hsa-mir-320e ; hsa-mir-4429 ; hsa-mir-4524a-5p ; hsa-mir-5189-5p ; hsa-mir-4524b-5p ; hsa-mir-6721-5p ; hsa-mir-6838-5p ; hsa-mir-6860 ; hsa-mir-18a-5p ; hsa-mir-376a-3p ; hsa-mir-18b-5p ; hsa-mir-376b-3p ; hsa-mir-4310 ; hsa-mir-4735-3p ; hsa-mir-7157-5p ; hsa-mir-193b-3p ; hsa-mir-548s ; hsa-mir-3190-5p ; hsa-mir-3926 ; hsa-mir-4709-3p ; hsa-mir-4790-3p ; hsa-mir-3591-5p ; hsa-mir-921 ; hsa-mir-4286 ; hsa-mir-3606-5p ; hsa-mir-6768-3p ; hsa-mir-6892-5p ; hsa-mir-555 ; hsa-mir-2467-3p ; hsa-mir-5186 ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-4712-3p ; hsa-mir-7845-5p ; hsa-mir-4475 ; hsa-mir-645 ; hsa-mir-3065-3p ; hsa-mir-6865-3p ; hsa-mir-6871-3p ; hsa-mir-4772-3p ; hsa-mir-646 ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-577 ; hsa-mir-4468 ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-4714-3p ; hsa-mir-1273e ; hsa-mir-3977 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4327 ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-4469 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-3162-3p ; hsa-mir-4539 ; hsa-mir-5096 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-4753-3p ; hsa-mir-377-3p ; hsa-mir-3160-5p ; hsa-mir-627-3p ; hsa-mir-130b-5p ; hsa-mir-6870-3p ; hsa-mir-4650-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-8064 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-764 ; hsa-mir-552-3p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-5007-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-mir-1225/Upstream/2158072; hsa-mir-11401/Downstream/538909;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/22610, chr16-CpG: 77/Downstream/14363

Upstream sequence

GTTAATTTGAGGTCACCAGGGAAGATAGTTGCCCTATTTTTGAAATTGCCACTAGCAGGTAACCCACGGAAGATAACTTTACAAGGAAGAACGAAGAACT

Downstream sequence

ATAGTCATAATGTGCTTTTGAGCTAAAGATGTTGCTGAGTATTCTCATAGCTGTTATCCACCTAGCTGGAGAGAGATCAGCCACTTGGGAAATTCAGAGC