Basic Information
VIS ID
TVIS30012117
Fusion event
HIV-ZG16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29772388/29761067 (Hg38)
End
29772388/29761067 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZG16
miRNAs that regulate target gene
hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-130b-5p ; hsa-mir-877-3p ; hsa-mir-3607-5p ; hsa-mir-96-3p ; hsa-mir-2681-3p
Nearest miRNA
hsa-mir-1225/Upstream/161802; hsa-mir-11401/Downstream/742852;
Nearest TSS
ENST00000527434/Upstream/15061; ENST00000400752/Downstream/17173;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/65930, chr16-CpG: 36/Downstream/23973
Nearby gene
C16orf54(No orient, 15048)
Upstream sequence
ggccattaagtttgggggtggtttatggcataaaaattggtaattggagcaCTCGACTTCAAGGGTTCTCACCAGGTGTGTGAGGGTGAGGGTGGCCCTG
Downstream sequence
CGGAGTGAGTGGCCTGTGGGGGCTGGTCATATTTCATCCCTAGGCTCTCCCGACCTGGCTCTGCCAGATTCTTACACGGATGAGGGCCTGGACTGGGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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