Basic Information
VIS ID
TVIS30012122
Fusion event
HIV-ITGAM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31303346/31292025 (Hg38)
End
31303346/31292025 (Hg38)
Orient
-
Location type
Intronic
Target gene
ITGAM
Nearest miRNA
hsa-mir-1225/Upstream/398040; hsa-mir-11401/Downstream/2871553;
Nearest TSS
ENST00000527434/Upstream/16433; ENST00000561838/Downstream/32653;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/67242, chr16-CpG: 53/Downstream/39106
Upstream sequence
ctacaggaatggaattggaatgttcccagcaaaagaaatgataaatccttgaggcaacggatatcccagttaccctgatttgatcatcacacattgtatg
Downstream sequence
cttgtataaaaatatcacatgttccctataaatatgtgcaattattacatattcataaaaaggtaaaaaTCCTAGAAGTATATTTTGCAGAATTTAGCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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