VISDB Viral Integration Site DataBase

VIS ID

TVIS30012124

Fusion event

HIV-ZNF267 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

31899133/31887812 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-6885-3p ; hsa-mir-510-3p ; hsa-mir-4477b ; hsa-mir-183-3p ; hsa-mir-488-3p ; hsa-mir-6124 ; hsa-mir-190a-3p ; hsa-mir-3160-5p ; hsa-mir-4680-3p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-651-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-5692a ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-548e-5p ; hsa-mir-3064-3p ; hsa-mir-4633-5p ; hsa-mir-154-5p ; hsa-mir-548m ; hsa-mir-6841-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-137 ; hsa-mir-2276-3p ; hsa-mir-4772-3p ; hsa-mir-4729 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-130a-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c

Nearest miRNA

hsa-mir-1225/Upstream/993827; hsa-mir-11401/Downstream/2275766;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/13533, chr16-CpG: 30/Downstream/94070

Upstream sequence

tttttgtattctattccattggtctatgtgtctgtttttacgtcagtaccatactcttgattagtatagctgtgtaatagtttgaaatgaagaagtgtga

Downstream sequence

tgcctctagctttattcttctttttcaagattgcatgggctatttggagttatttgtgattccattgaagttttataattttttctatttctgtgaaaaa