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Viral Integration Site DataBase
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TVIS30012125
Basic Information
VIS ID
TVIS30012125
Fusion event
HIV-ZNF267 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31905861/31894540 (Hg38)
End
31905861/31894540 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF267
miRNAs that regulate target gene
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-98-5p
;
hsa-mir-6885-3p
;
hsa-mir-510-3p
;
hsa-mir-4477b
;
hsa-mir-183-3p
;
hsa-mir-488-3p
;
hsa-mir-6124
;
hsa-mir-190a-3p
;
hsa-mir-3160-5p
;
hsa-mir-4680-3p
;
hsa-mir-410-3p
;
hsa-mir-5692c
;
hsa-mir-5692b
;
hsa-mir-6838-5p
;
hsa-mir-497-5p
;
hsa-mir-424-5p
;
hsa-mir-195-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-15a-5p
;
hsa-mir-651-3p
;
hsa-mir-3591-3p
;
hsa-mir-21-3p
;
hsa-mir-5692a
;
hsa-mir-4429
;
hsa-mir-320d
;
hsa-mir-320c
;
hsa-mir-320b
;
hsa-mir-320a
;
hsa-mir-548e-5p
;
hsa-mir-3064-3p
;
hsa-mir-4633-5p
;
hsa-mir-154-5p
;
hsa-mir-548m
;
hsa-mir-6841-3p
;
hsa-mir-4482-3p
;
hsa-mir-7159-3p
;
hsa-mir-137
;
hsa-mir-2276-3p
;
hsa-mir-4772-3p
;
hsa-mir-4729
;
hsa-mir-92b-3p
;
hsa-mir-92a-3p
;
hsa-mir-367-3p
;
hsa-mir-363-3p
;
hsa-mir-32-5p
;
hsa-mir-25-3p
;
hsa-mir-130a-5p
;
hsa-mir-23a-3p
;
hsa-mir-23b-3p
;
hsa-mir-23c
Nearest miRNA
hsa-mir-1225/Upstream/1000555; hsa-mir-11401/Downstream/2269038;
Nearest TSS
ENST00000527434/Upstream/20474;
ENST00000575471/Downstream/17314;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/20261
,
chr16-CpG: 30/Downstream/87342
Upstream sequence
TCCACCTGTTAGTGTTTTTTTTTTCTGACTATTCTGTTGTTTAAGAATCATTAGCTCTTTGTGTGTGACACCTAATTCTTCTTCTAACAAACTACATCTT
Downstream sequence
TCAAGTGCTGCTCATAATCGCGCTCTCACCTTTTCATCCAGAGCTTTGTGCTGTTCAGATAATGACTTCAGTGCTTTCAGCACTTCAGCTTCGCTGGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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