VISDB Viral Integration Site DataBase

VIS ID

TVIS30012133

Fusion event

HIV-CHD9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q12.2

Reference genome

Start

End

53260321/53226409 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-155-5p ; hsa-mir-7-5p ; hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-22-3p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-376a-5p ; hsa-mir-181d-5p ; hsa-mir-376a-2-5p ; hsa-mir-944 ; hsa-mir-664a-3p ; hsa-mir-2052 ; hsa-mir-1193 ; hsa-mir-4262 ; hsa-mir-3607-3p ; hsa-mir-3668 ; hsa-mir-3686 ; hsa-mir-3935 ; hsa-mir-4663 ; hsa-mir-4682 ; hsa-mir-8077 ; hsa-mir-433-3p ; hsa-mir-7154-5p ; hsa-mir-34b-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6794-3p ; hsa-mir-627-3p ; hsa-mir-4639-3p ; hsa-mir-342-3p ; hsa-mir-548c-3p ; hsa-mir-3163 ; hsa-mir-628-5p ; hsa-mir-7641 ; hsa-mir-3171 ; hsa-mir-139-5p

Nearest miRNA

hsa-mir-1225/Upstream/2484032; hsa-mir-11401/Downstream/3019111;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/94483, chr16-CpG: 37/Downstream/147006

Upstream sequence

CAAAAACTTTTCTTCAAAATAAATTATATAAATCTGATTCTTGTGGTTCATTACAGAAAAGAAGATCAAATCGACAAATTAAAAGAAAAAAATACGCAGA

Downstream sequence

AGATATAGAAGGGAAGCAATCTGAAGAAGAGGTTAAAGGTTCTATGAAAATAAAAAAGAATTCAGCTCCTTTACCTGGTGAACAGCCTTTACAATTGTTT