Basic Information
VIS ID
TVIS30012135
Fusion event
HIV-LOC102723373 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
53415602/53381690 (Hg38)
End
53415602/53381690 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC102723373
Nearest miRNA
hsa-mir-1225/Upstream/2639313; hsa-mir-11401/Downstream/2863830;
Nearest TSS
ENST00000527434/Upstream/3234; ENST00000571340/Downstream/5254;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/7848, chr16-CpG: 79/Downstream/52799
Upstream sequence
cttcatcttaacttaaccatctgcaaagaccttgtttccaaacaaggtcacatttacaggtactgggtgtaggacttcaacatccttttggaagacacag
Downstream sequence
tctacccataacaagtatgtaccataccttattcagccattctatagaagagcatttaggttattttcaatattctgaaattctaaacacattgcatgtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate