Basic Information
VIS ID
TVIS30012145
Fusion event
HIV-CKLF-CMTM1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
66604914/66571011 (Hg38)
End
66604914/66571011 (Hg38)
Orient
+
Location type
Intronic
Target gene
CKLF-CMTM1
Nearest miRNA
hsa-mir-1225/Upstream/8798659; hsa-mir-11401/Downstream/631310;
Nearest TSS
ENST00000527434/Upstream/4264; ENST00000569316/Downstream/8437;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/4346, chr16-CpG: 70/Downstream/7835
Upstream sequence
CAGCCACCCATCAGACCCATCAGATAGCTGGGTGGCGTTTGCCATTCTGTCTTGCGCTGTGAACAATCCTAATTCAGAGCTTAGGCCTCTTCCACATCCC
Downstream sequence
ACTTCCTTATAGAACATTTTTCTAACCTTAAAGTCAGAATGTTCCTTTTGAGCTAAAactcaaacattgtcttcaaatctgtgagagattttctcaaagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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