VISDB Viral Integration Site DataBase

VIS ID

TVIS30012146

Fusion event

HIV-DYNC1LI2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.1

Reference genome

Start

End

66782747/66748844 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-let-7f-5p ; hsa-mir-3676-3p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-3148 ; hsa-mir-183-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-4680-3p ; hsa-mir-1285-5p ; hsa-mir-651-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-759 ; hsa-mir-3613-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-526b-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-130a-3p ; hsa-mir-4295 ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-130b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-101-3p ; hsa-mir-1827 ; hsa-mir-25-3p ; hsa-mir-3160-3p ; hsa-mir-32-5p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-363-3p ; hsa-mir-3664-3p ; hsa-mir-367-3p ; hsa-mir-3689d ; hsa-mir-3929 ; hsa-mir-425-3p ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4452 ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4487 ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-500a-3p ; hsa-mir-510-5p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-582-5p ; hsa-mir-6134 ; hsa-mir-6500-3p ; hsa-mir-655-5p ; hsa-mir-665 ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6799-5p ; hsa-mir-6808-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-767-5p ; hsa-mir-7703 ; hsa-mir-7847-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-1225/Upstream/8976492; hsa-mir-11401/Downstream/453477;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/51485, chr16-CpG: 83/Downstream/2293

Upstream sequence

ACTGTCACAAAGAGATTCAGGAAACTCTCCTATTAACATATGTTAAATTGTTACACTCTAAACCACACCAACTTCGGATTCTCTACTAGAACCAGGCAGA

Downstream sequence

GTAACAATGGTCCCCAGGACAGCCAAGCATTTCTCTCATATAAAACTCCAAAGCTTTAAAAAATCTTTCTTACCACCTTTATGGGTTAAGTAAAAATTTA