Basic Information
VIS ID
TVIS30012174
Fusion event
HIV-VAT1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
77988798/77954901 (Hg38)
End
77988798/77954901 (Hg38)
Orient
-
Location type
Intronic
Target gene
VAT1L
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-4503 ; hsa-mir-4662a-5p ; hsa-mir-6792-5p
Nearest miRNA
hsa-mir-1225/Upstream/1085882; hsa-mir-11401/Downstream/3430117;
Nearest TSS
ENST00000527434/Upstream/92153; ENST00000565808/Downstream/67614;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/165664, chr16-CpG: 39/Downstream/90954
Upstream sequence
AGAGTTCCAGAATCACCAGGAGTAGACTACCTGTCCAGTCTCAATAAAAGAGGCCTAGGGTGAGGCCAATACATCACTTTTTAAAAGCAACATATGCGAT
Downstream sequence
TTTTTACTTTTTTTAAAGATCAACTCCAAATATAGGAAACACACGTGATTTTAATGCAGGCAGTCTTTAATTTCTATTTTTAAGAAAAGCTAATGTAACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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