Basic Information
VIS ID
TVIS30012176
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
82536169/82502564 (Hg38)
End
82536169/82502564 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/891156; hsa-mir-11401/Downstream/186367;
Nearest TSS
ENST00000527434/Upstream/332268; ENST00000569455/Downstream/8332;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/331767, chr16-CpG: 100/Downstream/124482
Nearby gene
CDH13(No orient, 124230)
Nearest cancer related gene
CDH13(TSG, No orient, 124230)
Upstream sequence
acaaacagcacgagaaggtagaaagagagagaccgagagacagagaaagagacgcccacacacagagatagatatagacggagagggaCTGCAGATCTGT
Downstream sequence
ATACAGAAAGGATGGAGGAACAATTGGCGTGGGTGTTAAAGCTGAGGCCTCTGCTTGCTGGTAGAAGAGCTAGAATAATTAATGGTCAGGCCAAGAAGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate