Basic Information
VIS ID
TVIS30012178
Fusion event
HIV-LOC105371393 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
86976741/86943135 (Hg38)
End
86976741/86943135 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371393
Nearest miRNA
hsa-mir-12128/Upstream/1024719; hsa-mir-11401/Downstream/891457;
Nearest TSS
ENST00000527434/Upstream/221043; ENST00000430050/Downstream/114649;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/11245, chr16-CpG: 50/Downstream/273356
Upstream sequence
CCCACTCCTGCTTTGGGAAGAGTAGTTGGCCCTCACTGCCAATCCTGGCAAACAACTAATTCCACACCAATGCTGCATGGATCTAAGCACTTTCTGAATC
Downstream sequence
TAGATCTGTGCATGGAGGCACTGAGTTCAGACAGAACATTCAGTTCACTAGGAATGAAGGTCTTGCCCATATCTACCTGGAGACTGGGAGCCTCCTCACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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