VISDB Viral Integration Site DataBase

VIS ID

TVIS30012179

Fusion event

HIV-ZCCHC14 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q24.2

Reference genome

Start

End

87510106/87476500 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-142-3p ; hsa-mir-24-3p ; hsa-mir-19b-3p ; hsa-mir-1180-3p ; hsa-mir-1301-3p ; hsa-mir-744-5p ; hsa-mir-15b-5p ; hsa-mir-93-5p ; hsa-mir-544a ; hsa-mir-5571-5p ; hsa-mir-153-3p ; hsa-mir-448 ; hsa-mir-432-5p ; hsa-mir-377-3p ; hsa-mir-382-5p ; hsa-mir-493-3p ; hsa-mir-218-5p ; hsa-mir-3674 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-3190-3p ; hsa-mir-6073 ; hsa-mir-4437 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-4662a-3p ; hsa-mir-20a-3p ; hsa-mir-3163 ; hsa-mir-4272 ; hsa-mir-5680 ; hsa-mir-33a-5p ; hsa-mir-33b-5p ; hsa-mir-1224-5p ; hsa-mir-3944-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-5196-3p ; hsa-mir-1283 ; hsa-mir-520d-5p ; hsa-mir-524-5p ; hsa-mir-5589-3p ; hsa-mir-6863 ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-12128/Upstream/1558084; hsa-mir-11401/Downstream/358092;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/61975, chr16-CpG: 20/Downstream/1253

Upstream sequence

caaacaacaatactatatatgttgtgatgtctacagcacagatgtaacatgtacacttgccacagcaaggaccgggaaggcacctggttgcaagacagtg

Downstream sequence

accagcttcttacactgcacaaggcggggtacggtattaactccaagcagactgtgtaaagttcagtatctacagtgtcatctctagaccagccactaaa