Basic Information
VIS ID
TVIS30012192
Fusion event
HIV-ZNF276 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
89792012/89725604 (Hg38)
End
89792012/89725604 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZNF276
miRNAs that regulate target gene
hsa-mir-149-5p ; hsa-mir-92a-3p ; hsa-mir-1303 ; hsa-mir-3149 ; hsa-mir-411-5p ; hsa-mir-4735-5p ; hsa-mir-4775 ; hsa-mir-483-5p ; hsa-mir-590-3p ; hsa-mir-6832-5p
Nearest miRNA
hsa-mir-11401/Upstream/1009267;
Nearest TSS
ENST00000527434/Upstream/1998; ENST00000569582/Downstream/5922;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2923, chr16-CpG: 140/Downstream/90380
Upstream sequence
TTTTAggccaagtgcagtggttcacgcctgtaatcccagcactctgggatgctgaggtaggcggatcacggggtcaggagatcgagaccatcctgactaa
Downstream sequence
cacggtgaaaccccatctctactaaaaatacaaaaaattagctggatgtggctgtggttgcctgtaggcccagctacttgggaggctgaggcaggagaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate