VISDB Viral Integration Site DataBase

VIS ID

TVIS30012201

Fusion event

HIV-CRK integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.3

Reference genome

Start

End

1325702/1422408 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-126-3p ; hsa-mir-132-3p ; hsa-mir-125a-5p ; hsa-mir-215-5p ; hsa-mir-10a-5p ; hsa-mir-192-5p ; hsa-mir-106b-3p ; hsa-mir-129-1-3p ; hsa-mir-15b-5p ; hsa-let-7e-5p ; hsa-mir-1260b ; hsa-mir-1257 ; hsa-mir-4320 ; hsa-mir-8485 ; hsa-mir-205-3p ; hsa-mir-10b-5p ; hsa-let-7c-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-5096 ; hsa-mir-3941 ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-3140-3p ; hsa-mir-6893-3p ; hsa-mir-6128 ; hsa-mir-370-3p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-619-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-216b-3p ; hsa-mir-7156-3p ; hsa-mir-127-5p ; hsa-mir-4284 ; hsa-mir-7843-3p ; hsa-mir-1184 ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6890-3p ; hsa-mir-1306-5p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6516-5p ; hsa-mir-1273h-3p ; hsa-mir-3678-3p ; hsa-mir-190a-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-298 ; hsa-mir-3163 ; hsa-mir-5680 ; hsa-mir-646 ; hsa-mir-580-5p ; hsa-mir-410-3p ; hsa-mir-16-5p ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-9-3p ; hsa-mir-423-3p ; hsa-mir-31-3p ; hsa-mir-502-3p ; hsa-mir-5590-3p ; hsa-mir-501-3p ; hsa-mir-142-5p ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-320d ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-4429 ; hsa-mir-320c ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-519d-3p ; hsa-mir-17-5p ; hsa-mir-302d-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-302a-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302b-3p ; hsa-mir-520e ; hsa-mir-302c-3p ; hsa-mir-135b-3p ; hsa-mir-664b-5p ; hsa-mir-6814-5p ; hsa-mir-4733-5p ; hsa-mir-548l ; hsa-mir-186-5p ; hsa-mir-548n ; hsa-mir-6818-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4790-3p ; hsa-mir-4652-3p ; hsa-mir-640 ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-6787-3p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-1207-3p ; hsa-mir-4778-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-126-5p ; hsa-mir-138-2-3p ; hsa-mir-1910-3p ; hsa-mir-2110 ; hsa-mir-3065-5p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3150a-3p ; hsa-mir-3192-5p ; hsa-mir-33a-5p ; hsa-mir-33b-5p ; hsa-mir-3680-3p ; hsa-mir-3714 ; hsa-mir-4260 ; hsa-mir-4271 ; hsa-mir-4463 ; hsa-mir-4477a ; hsa-mir-4487 ; hsa-mir-450a-2-3p ; hsa-mir-4725-3p ; hsa-mir-548c-3p ; hsa-mir-5572 ; hsa-mir-605-3p ; hsa-mir-6511a-5p ; hsa-mir-6731-5p ; hsa-mir-6763-5p ; hsa-mir-6780b-5p ; hsa-mir-6788-5p ; hsa-mir-6810-5p ; hsa-mir-6857-5p ; hsa-mir-6878-5p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-7851-3p ; hsa-mir-8085 ; hsa-mir-873-3p ; hsa-mir-95-5p

Nearest miRNA

hsa-mir-3183/Upstream/399849; hsa-mir-10226/Downstream/291495;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/21813, chr17-CpG: 93/Downstream/33238

Nearest cancer related gene

CRK(OG, No orient, 0)

Upstream sequence

gtgcaccaccacgccgggctaattttttatatctttagcagagatggggtttcactatgttggccaggctggtctcgaactcctgacctcatgatccacc

Downstream sequence

cgcctcggcctcccaaagtgctgggattacagacgtgagccaccgcgcccagccGGTTCAACATTTTTTCAAAGCACTAACCCTACCCCAAATTCATGTA