Basic Information
VIS ID
TVIS30012210
Fusion event
HIV-PAFAH1B1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
End
2558647/2655353 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-132/Upstream/604973; hsa-mir-10226/Downstream/37508;
Nearest cancer related gene
PAFAH1B1(TSG, No orient, 0)
Upstream sequence
AAGATATGATCAAGGTCAAAATTGTTGACTTTCTGGAGAATTCATACAAAGCCCTTTTACATACCACATCACATTGCATTTCACTGAAAGATGGAGGGTA
Downstream sequence
TTCTAGAGAATTGTATTAGAAAGAGAAGACACATCGTAggccaggcacagtggctcacttctgtaatcccagcaccttgggaggccgaagcaggtggatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate