Basic Information
VIS ID
TVIS30012216
Fusion event
HIV-KIAA0753 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
6523917/6620597 (Hg38)
End
6523917/6620597 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIAA0753
Nearest miRNA
hsa-mir-1253/Upstream/1650447; hsa-mir-10226/Downstream/34843;
Nearest TSS
ENST00000595228/Upstream/13669; ENST00000571957/Downstream/310;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/63993, chr17-CpG: 99/Downstream/19437
Upstream sequence
AAAATAAACTTTTTTTAAAGTAGGGTTCTAACTTCCAGCTCTATGGGAATTTGCCTTGGGTAGCCCAAACACTATGATGTAGCAAAGGAAATGTTACTTT
Downstream sequence
CTCAACCTTCCTCTATAGAATGCCTCCAGCCCCAGGAAACATCTTGGTTGCTATTTACTGATCCTAGTTAAAGTTCATCTGTTGTGGGCTAGGTCCTAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate