VISDB Viral Integration Site DataBase

VIS ID

TVIS30012220

Fusion event

HIV-CTDNEP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

7152527/7249208 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-1229-3p ; hsa-mir-1226-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-4651 ; hsa-mir-608 ; hsa-mir-486-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5194 ; hsa-mir-6738-5p ; hsa-mir-1914-3p ; hsa-mir-4725-5p ; hsa-mir-6752-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-1910-5p ; hsa-mir-4514 ; hsa-mir-6782-5p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-7843-5p ; hsa-mir-6879-5p ; hsa-mir-6735-5p ; hsa-mir-4632-5p ; hsa-mir-4436b-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6784-3p ; hsa-mir-6730-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-510-5p ; hsa-mir-887-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-6825-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-744-5p ; hsa-mir-3195 ; hsa-mir-6087 ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-4644 ; hsa-mir-5011-3p ; hsa-mir-299-5p ; hsa-mir-5700 ; hsa-mir-3148 ; hsa-mir-4311 ; hsa-mir-651-3p ; hsa-mir-122-5p

Nearest miRNA

hsa-mir-1253/Upstream/25829; hsa-mir-10226/Downstream/838848;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/5818, chr17-CpG: 131/Downstream/1897

Upstream sequence

GGACGTCACCACCTCATCCAGCTCTGCTTCTCCAAGCATTCTCTAGGGGCTATTTCCTAATACGCACATCTCCCCATACAAAGCCTGGCAATTCCCTCTT

Downstream sequence

CCACACTTTTCTTCAAAGGTACAAACCCTCTTCAGTGCATACCTAGGCCCCAAGCCACACCAGAACCAGGTTCTCCCTTCTAAACCCACAGGGCTCTCTC