Basic Information
VIS ID
TVIS30012223
Fusion event
HIV-NAA38 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7779745/7876427 (Hg38)
End
7779745/7876427 (Hg38)
Orient
+
Location type
Intronic
Target gene
NAA38
Nearest miRNA
hsa-mir-1253/Upstream/653048; hsa-mir-10226/Downstream/211629;
Nearest TSS
ENST00000595228/Upstream/18142; ENST00000574022/Downstream/8379;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/18065, chr17-CpG: 92/Downstream/8534
Nearby gene
CHD3(No orient, 8378)
Upstream sequence
CTTGTTTTTCTTTGGCTACTCCATCCTTCAAAGTTCCCCCAAGGTTCTGACCTCTACTCTTCACTTGATATACTAAAATTCTTACCCTTTAAAGAGGTAC
Downstream sequence
TAACTCCTACTATAACCTATCATGAACTTACCACTCCAGCCATATGAGGTCTACATACTACCTACTAAATTCTTTCTTATCCCACCTAAACTGCCCTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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