Basic Information
VIS ID
TVIS30012224
Fusion event
HIV-NAA38 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
7780732/7877414 (Hg38)
End
7780732/7877414 (Hg38)
Orient
-
Location type
Intronic
Target gene
NAA38
Nearest miRNA
hsa-mir-1253/Upstream/654035; hsa-mir-10226/Downstream/210642;
Nearest TSS
ENST00000595228/Upstream/19129; ENST00000574022/Downstream/7392;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/19052, chr17-CpG: 92/Downstream/7547
Nearby gene
CHD3(No orient, 7391)
Upstream sequence
atgtatcagtaaaaatattattgttttaatttctttaaacataaactaaatgatgtcattttttttttttttacaagttgcttgtttccattcaacaata
Downstream sequence
tattaaccatgtctctacatacagaagtaactcatttttcttTTTTCTTTTTCTTTTTAatggcctgcgacacagccccaggaaatcctgagaacatgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate