Basic Information
VIS ID
TVIS30012231
Fusion event
HIV-STX8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
9465670/9562353 (Hg38)
End
9465670/9562353 (Hg38)
Orient
-
Location type
Intronic
Target gene
STX8
Nearest miRNA
hsa-mir-1253/Upstream/1375349; hsa-mir-10226/Downstream/2519546;
Nearest TSS
ENST00000595228/Upstream/4843; ENST00000576499/Downstream/6105;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/321831, chr17-CpG: 26/Downstream/13337
Upstream sequence
aaattagccgggcatggtggcgggcgcctgtagccccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgaagtgagc
Downstream sequence
cgagatcgcgccaccgcactccagcctgggcgacagagcgagactccgtctcaggaaaaaaaaaaaaaaactttcacacgacaaaactaccacaagcaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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