VISDB Viral Integration Site DataBase

VIS ID

TVIS30012244

Fusion event

HIV-POLDIP2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

26681273/28354247 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-3934-3p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-3664-3p ; hsa-mir-873-5p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-6854-5p ; hsa-mir-562 ; hsa-mir-6739-3p ; hsa-mir-6875-3p ; hsa-mir-544a ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-6759-5p ; hsa-mir-6796-5p ; hsa-mir-4322 ; hsa-mir-4296 ; hsa-mir-4265 ; hsa-mir-6728-5p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-5187-5p ; hsa-mir-4693-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-4712-3p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-542-3p ; hsa-mir-6715a-3p ; hsa-mir-6715b-3p ; hsa-mir-6767-3p

Nearest miRNA

hsa-mir-1180/Upstream/1060251; hsa-mir-10226/Downstream/6407;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/18225, chr17-CpG: 78/Downstream/2892

Upstream sequence

GTTTTAATGTATTCTAGGGATGATGTGAGATTGAGGGAAAGACTCCAGCTGAACATCAAGAAATCAAGAAGACTTGTCCCCCAAATGCCCTCTGGGATAC

Downstream sequence

TCATAATGAAAATTAGGAATGGCTTAGGAAAGCATTCTGAGGAGGCCTAAAGGGACTCTCTGACTTAGACTATCCCTGGCACTCAGCACTTTTGTCTCCA