Basic Information
VIS ID
TVIS30012246
Fusion event
HIV-LOC101927018 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
27265002/28937984 (Hg38)
End
27265002/28937984 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101927018
Nearest miRNA
hsa-mir-1180/Upstream/76254; hsa-mir-10226/Downstream/452678;
Nearest TSS
ENST00000595228/Upstream/9694; ENST00000579154/Downstream/6812;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/34824, chr17-CpG: 193/Downstream/11217
Upstream sequence
ATTGATGCTAGAGCCCACCTGTTTTGGAAAAGGGACAAAATTCTGGCCTCAACGGTAATTTTCTCACACTCTTGGGAACATTCCATTGGAAGGAAGAACC
Downstream sequence
AACAACTGCCAACTCTGTATTCTGGAAGAGTCTCAGAGGTATGGAAAGCTGGGTACTATTCTATTGCCAAATTTTAACAGACTATCAAGAAAAAGGAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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