Basic Information
VIS ID
TVIS30012259
Fusion event
HIV-LRRC37B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
30340141/32013122 (Hg38)
End
30340141/32013122 (Hg38)
Orient
+
Location type
Intronic
Target gene
LRRC37B
Nearest miRNA
hsa-mir-1180/Upstream/437601; hsa-mir-10226/Downstream/336987;
Nearest TSS
ENST00000595228/Upstream/5086; ENST00000581786/Downstream/7883;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/5015, chr17-CpG: 61/Downstream/129191
Nearby gene
LRRC37B(No orient, 8014)
Upstream sequence
agacagacaaacaaaaaaccattatttaatactaatataaaattagtgttttatattagtaacataatactgtttttgactagtgttagaatgacatatc
Downstream sequence
tttccctacccttttgcttttaatctATATATCATGATATTCGTTTACTTTCAATTTATAAAAAtagagatggggttttgccatgttgcccaggctggtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate