VISDB Viral Integration Site DataBase

VIS ID

TVIS30012261

Fusion event

HIV-ZNF207 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

30688225/32361206 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-361-5p ; hsa-mir-30e-5p ; hsa-mir-26a-5p ; hsa-let-7b-5p ; hsa-mir-33a-3p ; hsa-mir-299-3p ; hsa-mir-409-3p ; hsa-mir-8068 ; hsa-mir-101-3p ; hsa-mir-1343-3p ; hsa-mir-4774-5p ; hsa-mir-6783-3p ; hsa-mir-4772-3p ; hsa-mir-224-5p ; hsa-mir-4786-3p ; hsa-mir-144-3p ; hsa-mir-3910 ; hsa-mir-548an ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-2053 ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-323b-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-6507-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-5589-5p ; hsa-mir-1207-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-140-3p ; hsa-mir-891b ; hsa-mir-378a-5p ; hsa-mir-4683 ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-5193 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-331-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-4762-5p ; hsa-mir-34c-3p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-1306-5p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6734-3p ; hsa-mir-1224-3p ; hsa-mir-1229-3p ; hsa-mir-627-3p ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-5003-3p ; hsa-mir-3929 ; hsa-mir-4329 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-6746-5p ; hsa-mir-6771-5p

Nearest miRNA

hsa-mir-1180/Upstream/11004; hsa-mir-10226/Downstream/4672539;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/10765, chr17-CpG: 94/Downstream/82736

Upstream sequence

GGATCAACCAGTAAATTTAAGGAATATAAATTTGCCTCTGAGTAATAGATTTTTGGGTTTTAGGGTATATGTAAGCAACCATCTACTTCAATTGCATTTA

Downstream sequence

CTGTGATTAAAGTAGTTGGTTATTTATAGATTTGCGTTTCTGAGATTCAGAATTATCTGTGACACTTTGTAGTTGTGACAAGAAGCAGAGAAACTCTGTA