Basic Information
VIS ID
TVIS30012287
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
38260798/40104545 (Hg38)
End
38260798/40104545 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/78136; hsa-mir-10226/Downstream/57388;
Nearest TSS
ENST00000595228/Upstream/3820; ENST00000578826/Downstream/17753;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3716, chr17-CpG: 155/Downstream/16962
Nearby gene
NR1D1(No orient, 3820)
Upstream sequence
GGATCCAGGTAGAAAAGATGCATATTCACAACCTGGTACAGCAAGGCACTGCCCTGGTTCTGCATACACTTCCACTTGGATTCCCAAGTCTGGGATTCTG
Downstream sequence
GGGACGAACCTTCCCATTAGGGGCAGTGTTGGATCCTGCCTGTGTGTTTCCAAATATGTCTTTAATTTTCCTTGATTTATTTGGACTGCAGAGGACAGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate