VISDB Viral Integration Site DataBase

VIS ID

TVIS30012288

Fusion event

HIV-WIPF2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

38413511/40257259 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-1245a ; hsa-mir-8079 ; hsa-mir-3591-5p ; hsa-mir-7854-3p ; hsa-mir-5197-3p ; hsa-mir-218-5p ; hsa-mir-4276 ; hsa-mir-6077 ; hsa-mir-5190 ; hsa-mir-3919 ; hsa-mir-4688 ; hsa-mir-6743-5p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-4766-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-4710 ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-512-3p ; hsa-mir-2278 ; hsa-mir-1276 ; hsa-mir-361-5p ; hsa-mir-3619-3p ; hsa-mir-2115-3p ; hsa-mir-3163 ; hsa-mir-6816-3p ; hsa-mir-8080 ; hsa-mir-449c-3p ; hsa-mir-8086 ; hsa-mir-3121-5p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-8062 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-6796-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-7109-3p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-519d-3p ; hsa-mir-129-5p ; hsa-mir-450a-5p ; hsa-mir-6821-5p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-4668-5p ; hsa-mir-766-5p ; hsa-mir-580-3p ; hsa-mir-7977 ; hsa-mir-7160-5p ; hsa-mir-6134 ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-7162-3p ; hsa-mir-383-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-4793-5p ; hsa-mir-3613-3p ; hsa-mir-5692a ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-5581-3p ; hsa-mir-4448 ; hsa-mir-4758-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-4267 ; hsa-mir-6736-3p ; hsa-mir-4323 ; hsa-mir-6858-3p ; hsa-mir-143-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-3690 ; hsa-mir-378j ; hsa-mir-4254 ; hsa-mir-4279 ; hsa-mir-4320 ; hsa-mir-4722-3p ; hsa-mir-498 ; hsa-mir-6499-3p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-6839-5p ; hsa-mir-5693

Nearest miRNA

hsa-mir-1180/Upstream/63596; hsa-mir-10226/Downstream/1259905;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/37675, chr17-CpG: 31/Downstream/30304

Upstream sequence

gtagagatggggtttcaccatgttggccaggctggtcttgaactcctgaccttgtgatcctcctgccttggcctcccaaagtgccgggattacaggtgtg

Downstream sequence

agccaccgcgcccggcTTGAGGATTCTTAGTGGTTGTTTCTTGCTACCACTTCATCATCTCTTCTATTCAAAATCAGTTCATTTTAAAGCCAAGTCCATC