Basic Information
VIS ID
TVIS30012290
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
38741265/40585013 (Hg38)
End
38741265/40585013 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/391350; hsa-mir-10226/Downstream/932151;
Nearest TSS
ENST00000595228/Upstream/19541; ENST00000619697/Downstream/46748;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/140959, chr17-CpG: 69/Downstream/62679
Nearby gene
CCR7(No orient, 19529)
Upstream sequence
tcattgttggtgtatagaagagctactaatttgtgtatattaatcttataattggaaactttgctgaattcttttatcagttctggaggagtccttaggg
Downstream sequence
ttttcaaggtaaactatcatatcatcagcaaacagggacagtttgacttcctctttgctgatttggatgccctttatttctttctcttgtctgattgctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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