VISDB Viral Integration Site DataBase

VIS ID

TVIS30012295

Fusion event

HIV-NKIRAS2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

40171026/42019008 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-let-7a-5p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-96-5p ; hsa-mir-147a ; hsa-mir-5010-3p ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-29a-3p ; hsa-mir-583 ; hsa-mir-4419a ; hsa-mir-4434 ; hsa-mir-4510 ; hsa-mir-4516 ; hsa-mir-5682 ; hsa-mir-5703 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6760-5p ; hsa-mir-6871-3p ; hsa-mir-6873-5p ; hsa-mir-6878-5p ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-4711-5p ; hsa-mir-7112-3p ; hsa-mir-4786-3p ; hsa-mir-4635 ; hsa-mir-95-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-4642 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-2110 ; hsa-mir-491-5p ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-1908-5p

Nearest miRNA

hsa-mir-1180/Upstream/501791; hsa-mir-10226/Downstream/475765;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/1332, chr17-CpG: 39/Downstream/905

Upstream sequence

ttgtctacccacacctcaacaacagaaaaaacaaatgttggatgtaattattatctttcctaaattccgtatcttgttaaatggattaaaccattctcac

Downstream sequence

tcttggcttccaatttgttgccaagttttgttgattctcctaccaaatatttcccaaatctatctccacctttccatcccgattcaggcgctcatcattt