Basic Information
VIS ID
TVIS30012305
Fusion event
HIV-ATP6V0A1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
40629507/42477489 (Hg38)
End
40629507/42477489 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP6V0A1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-335-5p
Nearest miRNA
hsa-mir-1180/Upstream/960272; hsa-mir-10226/Downstream/17284;
Nearest TSS
ENST00000595228/Upstream/7307; ENST00000586001/Downstream/154;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/18475, chr17-CpG: 76/Downstream/58526
Upstream sequence
TTTTCCTTTTGCTCCTTATTTCTAAAACCATTTCCCCAGATGCTTTACTGGGGCAATTATGCTTTCTTTACCTCAAATTTATTTTCTGTGTTTTCATCCC
Downstream sequence
CTATTCTTCTTGTCTTTTTATGGATATATCTTGTCTTTTCGTGGTTTGTTTTCTTTTTCATCCTTATTTTCTGAACCTGTCTCCTGGTTCCTCGTTGCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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