VISDB Viral Integration Site DataBase

VIS ID

TVIS30012307

Fusion event

HIV-RUNDC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.31

Reference genome

Start

End

41147064/42995047 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1915-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-511-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6867-3p ; hsa-mir-6830-3p ; hsa-mir-1289 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-339-5p ; hsa-mir-6514-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-744-3p ; hsa-mir-106a-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-3622b-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p

Nearest miRNA

hsa-mir-1180/Upstream/171104; hsa-mir-10226/Downstream/449759;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/13818, chr17-CpG: 28/Downstream/3228

Nearby gene

RUNDC1(No orient, 1357)

Upstream sequence

TGTTAAAGCCGTCTAAGGTGCTCTCCAAtcattcattcactattgatcacttagcaactgcctgcctagactagatgctaaagaaagagaaaagtaaacc

Downstream sequence

taccccgtgccctcaacaaacacagtctagcaaaggagataCCATACCAATTGGAGatttggagagactgttaaaatatagattgctgggtcccatcccc