Basic Information
VIS ID
TVIS30012310
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
42210958/44133590 (Hg38)
End
42210958/44133590 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/688705; hsa-mir-10226/Downstream/74181;
Nearest TSS
ENST00000595228/Upstream/9888; ENST00000588434/Downstream/8316;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/9415, chr17-CpG: 41/Downstream/8195
Nearby gene
C17orf53(No orient, 8316)
Upstream sequence
gaggatttttccagctctggcagctaactctagaattGGATCTCAaaacaaacaaacaaacaaacaaacaaacaaacaaaGGAGGACCTGGCTAGAGGCG
Downstream sequence
AGAGCCTCAGTCATTCCTCACCTGAGAGCCCTACCTAACCCTTGACACCTTCTGTCCCTTTTCAGGCCTCCCACCTCCTGCCTTCCTGGCCTAGAGATCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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