Basic Information
VIS ID
TVIS30012316
Fusion event
HIV-MAP3K14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43382138/45304772 (Hg38)
End
43382138/45304772 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAP3K14
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-520e ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-1180/Upstream/190339; hsa-mir-10226/Downstream/170591;
Nearest TSS
ENST00000595228/Upstream/13796; ENST00000592389/Downstream/12245;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/42307, chr17-CpG: 108/Downstream/11753
Upstream sequence
ataaaggaataatcaaagtgctcttaggatcagaaagaccctcagaggtaatttcttccaaCATATTACTTACTAATCCTGAGGAATGGCCATTCAGCTA
Downstream sequence
CATGACAGGATggccttggagtcagaagatctgagtttgaatcttagtttctcaatactctggtgtgtgaccatgggcaggtcacataatctgagactca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate