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TVIS30012321
Basic Information
VIS ID
TVIS30012321
Fusion event
HIV-KANSL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
44228284/46150918 (Hg38)
End
44228284/46150918 (Hg38)
Orient
+
Location type
Intronic
Target gene
KANSL1
miRNAs that regulate target gene
hsa-mir-130b-3p
;
hsa-mir-148a-3p
;
hsa-mir-106b-5p
;
hsa-mir-149-5p
;
hsa-mir-23b-3p
;
hsa-mir-17-5p
;
hsa-mir-154-3p
;
hsa-mir-487a-3p
;
hsa-mir-513a-3p
;
hsa-mir-513c-3p
;
hsa-mir-3606-3p
;
hsa-mir-130b-5p
;
hsa-mir-1287-3p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-555
;
hsa-mir-6881-5p
;
hsa-mir-6835-5p
;
hsa-mir-6825-5p
;
hsa-mir-6883-5p
;
hsa-mir-6799-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-6871-5p
;
hsa-mir-6732-5p
;
hsa-mir-449b-3p
;
hsa-mir-5683
;
hsa-mir-4664-3p
;
hsa-mir-1180-3p
;
hsa-mir-5585-3p
;
hsa-mir-1322
;
hsa-mir-1272
;
hsa-mir-548g-3p
;
hsa-mir-4282
;
hsa-mir-548f-3p
;
hsa-mir-548e-3p
;
hsa-mir-548az-3p
;
hsa-mir-548ar-3p
;
hsa-mir-548a-3p
;
hsa-mir-548x-3p
;
hsa-mir-548j-3p
;
hsa-mir-548aq-3p
;
hsa-mir-548am-3p
;
hsa-mir-548aj-3p
;
hsa-mir-548ah-3p
;
hsa-mir-548ae-3p
;
hsa-mir-548z
;
hsa-mir-548h-3p
;
hsa-mir-548d-3p
;
hsa-mir-548bb-3p
;
hsa-mir-548ac
;
hsa-mir-192-3p
;
hsa-mir-627-5p
;
hsa-mir-127-5p
;
hsa-mir-921
;
hsa-mir-3606-5p
;
hsa-mir-924
;
hsa-mir-6806-3p
;
hsa-mir-3928-5p
;
hsa-mir-3174
;
hsa-mir-155-5p
;
hsa-mir-365a-3p
;
hsa-mir-365b-3p
;
hsa-mir-4762-3p
;
hsa-mir-4756-3p
;
hsa-mir-7855-5p
;
hsa-mir-539-3p
;
hsa-mir-485-3p
;
hsa-mir-4524a-3p
;
hsa-mir-4768-3p
;
hsa-mir-4700-3p
;
hsa-mir-4524b-3p
;
hsa-mir-7111-3p
;
hsa-mir-6769b-3p
;
hsa-mir-4723-3p
;
hsa-mir-3183
;
hsa-mir-660-3p
;
hsa-mir-5193
;
hsa-mir-3974
;
hsa-mir-384
;
hsa-mir-3685
;
hsa-mir-4753-3p
;
hsa-mir-6873-3p
;
hsa-mir-7975
;
hsa-mir-5571-3p
;
hsa-mir-4789-5p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-8067
;
hsa-mir-6508-5p
;
hsa-mir-4528
;
hsa-mir-4742-3p
;
hsa-mir-548av-3p
;
hsa-mir-521
;
hsa-mir-5006-3p
;
hsa-mir-4755-5p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-623
;
hsa-mir-6870-3p
;
hsa-mir-5088-3p
Nearest miRNA
hsa-mir-1180/Upstream/675483; hsa-mir-10226/Downstream/822099;
Nearest TSS
ENST00000595228/Upstream/29580;
ENST00000572973/Downstream/20305;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/167754
,
chr17-CpG: 128/Downstream/42148
Upstream sequence
CTACCTGGGAAAACTAGGAATAACGACTACAGTAAATTATTATGCATTATGGCTTTTATAAACAGAAATTTAAGAACAGCTAAGTTAACTGCAAGATCCC
Downstream sequence
TATTCTGTCAAAAAAAAAAAAAAAAAACACGAGTATCTTGTGTTCAGCATTATGAATATAAAGAATAAAGACATGAGCAGTCTCATAACATAGACAAGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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