Basic Information
VIS ID
TVIS30012336
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
47266940/49189578 (Hg38)
End
47266940/49189578 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/465103; hsa-mir-1250/Downstream/98768;
Nearest TSS
ENST00000595228/Upstream/56611; ENST00000573347/Downstream/19334;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/56200, chr17-CpG: 80/Downstream/2391
Nearby gene
GNGT2(No orient, 16656)
Upstream sequence
cgattctccttcctcagcctcctgagtagctgggattacaggcacgcgccaatacacctggctaattttgtatttttagtagagacggggtttctccatg
Downstream sequence
ttggtcaggctggtctggaactcccgacctcaggtgatccactcacctggacctcccaaagtgctgggattacaggtgtgagccaccgtgcccagccTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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