Basic Information
VIS ID
TVIS30012337
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
47558105/49480743 (Hg38)
End
47558105/49480743 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/192289; hsa-mir-1250/Downstream/30074;
Nearest TSS
ENST00000595228/Upstream/18994; ENST00000509200/Downstream/14550;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/10221, chr17-CpG: 239/Downstream/14240
Nearby gene
NGFR(No orient, 14550)
Nearest cancer related gene
NGFR(TSG, No orient, 14550)
Upstream sequence
aaatgaatgatgcgttagtcaggaacctctgggttgtcaataacagaagtccatctcaaacctgcctaagaaaaaaagaagagactttatggctcaacat
Downstream sequence
aacttaagtttactgcagtagggttagggttgaggtccggttaaagctaggtgcaggtgttaaatgtcgccactgaccatctcttggctctgctttttcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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