Basic Information
VIS ID
TVIS30012356
Fusion event
HIV-APPBP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
58576027/60498666 (Hg38)
End
58576027/60498666 (Hg38)
Orient
+
Location type
Intronic
Target gene
APPBP2
miRNAs that regulate target gene
hsa-mir-148a-3p ; hsa-mir-4452 ; hsa-mir-670-5p ; hsa-mir-513a-5p ; hsa-mir-2052 ; hsa-mir-6128 ; hsa-mir-6791-5p ; hsa-mir-4308 ; hsa-mir-4292 ; hsa-mir-3681-3p ; hsa-mir-3938 ; hsa-mir-216a-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-128-3p ; hsa-mir-144-3p ; hsa-mir-4497
Nearest miRNA
hsa-mir-10226/Upstream/455561; hsa-mir-1250/Downstream/2445549;
Nearest TSS
ENST00000595228/Upstream/33505; ENST00000559739/Downstream/27272;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/76695, chr17-CpG: 64/Downstream/26995
Upstream sequence
cacataataaaacaccatatatatatacagcaacaagaatgaacacactgtaattgcacataacataggtgattctcataaaacaatactgggggaaaaa
Downstream sequence
aaagccagacacaaaagggcacaaactgtataattgtatttaatatgttctaaaatacataaaatgaatctagtggttaccctaggggaggggaagtagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate