Basic Information
VIS ID
TVIS30012358
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
59670765/61593404 (Hg38)
End
59670765/61593404 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/1550299; hsa-mir-1250/Downstream/1350811;
Nearest TSS
ENST00000595228/Upstream/2202; ENST00000635817/Downstream/183076;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/130931, chr17-CpG: 21/Downstream/270060
Nearby gene
NACA2(No orient, 2202)
Upstream sequence
ctaggagaaaagagaggagtgtgatcagaaagggacataaagaggacttttggggtgctagtgatgttctagtttttgacctggataatggtgtatttag
Downstream sequence
ttgcagctcaatcagggaagaagaacctctttgggtcataggataagggatttattataggaattagaccttacacgactgtgggaggagctggggaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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