VISDB Viral Integration Site DataBase

VIS ID

TVIS30012359

Fusion event

HIV-MED13 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q23.2

Reference genome

Start

End

60131948/62054587 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-208a-3p ; hsa-mir-151a-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-1303 ; hsa-mir-30c-5p ; hsa-mir-196a-5p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-5580-3p ; hsa-mir-8084 ; hsa-mir-6831-3p ; hsa-mir-205-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-5585-3p ; hsa-mir-4708-5p ; hsa-mir-1253 ; hsa-mir-153-5p ; hsa-mir-95-5p ; hsa-mir-5197-3p ; hsa-mir-338-5p ; hsa-mir-5692a ; hsa-mir-3591-5p ; hsa-mir-4460 ; hsa-mir-4727-3p ; hsa-mir-4775 ; hsa-mir-7160-5p ; hsa-mir-3605-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-27b-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-590-3p ; hsa-mir-562 ; hsa-mir-140-5p ; hsa-mir-568 ; hsa-mir-4477a ; hsa-mir-3163 ; hsa-mir-595 ; hsa-mir-224-5p ; hsa-mir-4783-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485

Nearest miRNA

hsa-mir-10226/Upstream/2011482; hsa-mir-1250/Downstream/889628;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/126532, chr17-CpG: 101/Downstream/10299

Upstream sequence

CAAAACGTTTATGGGTTTCACTTCATTAAAGAAAGTATTAGGCTAGGAGAATAGAGAAGCAGCACAAAGTGACTTCACTTTAATTAATTAAAGGTCTAGA

Downstream sequence

TCACAAGCATATTTGTGAGTTGATGACAAAAAAAGAGAAAAGAATCTCAATTGATCTGCTTTCAATTTAATGAGGTCCTACCATTTCAAAATTAAATAGC