VISDB Viral Integration Site DataBase

VIS ID

TVIS30012368

Fusion event

HIV-ERN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q23.3

Reference genome

Start

End

62205468/64128108 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7a-5p ; hsa-mir-199a-5p ; hsa-mir-1291 ; hsa-mir-192-3p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-219b-3p ; hsa-mir-1184 ; hsa-mir-451b ; hsa-mir-186-5p ; hsa-mir-4539 ; hsa-mir-7158-3p ; hsa-mir-649 ; hsa-mir-490-3p ; hsa-mir-6749-3p ; hsa-mir-4680-5p ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-6887-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-302f ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-3612 ; hsa-mir-4459 ; hsa-mir-4687-3p ; hsa-mir-4695-5p ; hsa-mir-4700-3p ; hsa-mir-5582-5p ; hsa-mir-650

Nearest miRNA

hsa-mir-10226/Upstream/1183796; hsa-mir-1250/Downstream/372666;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/129007, chr17-CpG: 143/Downstream/1401

Upstream sequence

tttttttttttgagacagagtcttgctctgtcacccaggctggagcacagtgactccatctctgcaacctctgcctcccaggttcgggtgattctcctgc

Downstream sequence

ctcagcctccccagtagctgggattacaggcctgcgctaccacgcccggctaatttttttttttttttttttttgtatgtttagtagagacaaggtttca