Basic Information
VIS ID
TVIS30012370
Fusion event
HIV-POLG2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
62476900/64480783 (Hg38)
End
62476900/64480783 (Hg38)
Orient
-
Location type
Intronic
Target gene
POLG2
Nearest miRNA
hsa-mir-10226/Upstream/1536471; hsa-mir-1250/Downstream/19991;
Nearest TSS
ENST00000595228/Upstream/15331; ENST00000581056/Downstream/3447;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/217344, chr17-CpG: 43/Downstream/15981
Upstream sequence
AAAACCAAAACAGATTCTGTCAGAAAAAAACCAGGAGATCCAAAGGGCTGTATGAACTCAGAGCCCTCATCTGagaggtgagacctgagccctaggttat
Downstream sequence
accaccaagtcaggaagaggcagaagagccaggaaagaaaaaggatgagaaaaaggagagtggtattccagaagcaaaccccggaaaatgtttcaagaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate