Basic Information
VIS ID
TVIS30012381
Fusion event
HIV-AMZ2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
66229641/68233500 (Hg38)
End
66229641/68233500 (Hg38)
Orient
+
Location type
Intronic
Target gene
AMZ2
miRNAs that regulate target gene
hsa-mir-421
Nearest miRNA
hsa-mir-10226/Upstream/761915; hsa-mir-1250/Downstream/190951;
Nearest TSS
ENST00000595228/Upstream/28011; ENST00000582430/Downstream/14074;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/27319, chr17-CpG: 89/Downstream/13942
Nearby gene
AMZ2(No orient, 14504)
Upstream sequence
cgggaggctgaggcaggagaatcactcgaacctgggaggcggaggttgcagtgagccgataccgcaccactgcactctaacctgccgacaagagcgaaac
Downstream sequence
tatgtctcaaaaaaaaaaaaaaaaaaaagagagaaattgtcttcccctgcctcctgggagtgaaggtgctgatctatgaacctatgtccccagccctctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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