Basic Information
VIS ID
TVIS30012382
Fusion event
HIV-ARSG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
66285140/68288999 (Hg38)
End
66285140/68288999 (Hg38)
Orient
-
Location type
Intronic
Target gene
ARSG
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-10226/Upstream/817414; hsa-mir-1250/Downstream/135452;
Nearest TSS
ENST00000595228/Upstream/10667; ENST00000581639/Downstream/2117;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/29584, chr17-CpG: 205/Downstream/1401
Upstream sequence
tttccaacttacaaaactcgacaattctGAATGGGGGTTCCCGGCAGCCATCTTCCCTTCACCCTAGTGTTCTTCTGGAGGAAGTACAATGACACAATCC
Downstream sequence
ACGGGCAGTTTGGAGGATTTCCTAGTAGCATGTGGTTAAGTGTCCCCTTAAATAAATGAGTATTggccgggtgcggtagctcatgcctataatcccagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate